The Muslim Students Association (a.k.a. MSA) was first established in 2001 at John Fraser Secondary School. Since then, the MSA has had 4 presidents. There are the positions of President and two Vice-Presidents. The MSA serves to provide the Muslim students at JFSS with a prayer room for Friday prayers.
The MSA plans many activities for Muslim students such as Eid Parties, speeches to inform the students, and fostering knowledge about the religion. All are invited to attend these events. The MSA is the largest club in the school.